BLAST Search Results

BLASTN 2.2.26 [Sep-21-2011]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Database: pa14 
           1 sequences; 6,534,396 total letters



Query= 
         (686 letters)

Distribution of 66 Blast Hits on the Query Sequence



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GCTS_68                                                          1183   0.0   

>GCTS_68 
          Length = 6534396

 Score = 1183 bits (597), Expect = 0.0
 Identities = 628/637 (98%), Gaps = 1/637 (0%)
 Strand = Plus / Minus

                                                                          
Query: 50     tacccgttcaaccagttgctgatcctgttcctgggttagcatgaaagctcctcttcgaac 109
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 127295 tacccgttcaaccagttgctgatcctgttcctgggttagcatgaaagctcctcttcgaac 127236

                                                                          
Query: 110    ctggaggagcttcgagcgtcccagcgaatcgtcttgccaagatagactcgggcttcttgc 169
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 127235 ctggaggagcttcgagcgtcccagcgaatcgtcttgccaagatagactcgggcttcttgc 127176

                                                                          
Query: 170    aaaagttctcccctccaagcatgcgtcacgagttttttcctcgctcgtgacgtgcggccc 229
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 127175 aaaagttctcccctccaagcatgcgtcacgagttttttcctcgctcgtgacgtgcggccc 127116

                                                                          
Query: 230    cggacatcgtgtccgggccccgcgaaaatggattgcatcgggctcagggcccggcctctg 289
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 127115 cggacatcgtgtccgggccccgcgaaaatggattgcatcgggctcagggcccggcctctg 127056

                                                                          
Query: 290    tgccgctgggtaggccaaccggacgaggtcttcaggcatcctgctttggaaccgatgcgt 349
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 127055 tgccgctgggtaggccaaccggacgaggtcttcaggcatcctgctttggaaccgatgcgt 126996

                                                                          
Query: 350    ctaagaaagttccagcactacatcgccccgctctgatgacgcctgccgatgacaggcccg 409
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126995 ctaagaaagttccagcactacatcgccccgctctgatgacgcctgccgatgacaggcccg 126936

                                                                          
Query: 410    cagctcatccgccggaccggcagcgggggtgcgctattgtgccgccaggcccttctatat 469
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126935 cagctcatccgccggaccggcagcgggggtgcgctattgtgccgccaggcccttctatat 126876

                                                                          
Query: 470    actagggctccacctcatcgaaatggcgtggacaagccaacattatcaacacgatgtact 529
              |||||||||||||| |   ||||| ||| | |  ||||||||||||||||||||||||||
Sbjct: 126875 actagggctccaccacggggaaat-gcgggcatgagccaacattatcaacacgatgtact 126817

                                                                          
Query: 530    ggtcatcggcagcggcgccgccggcctgagtctggccttgacccttccggaacacctgcg 589
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126816 ggtcatcggcagcggcgccgccggcctgagtctggccttgacccttccggaacacctgcg 126757

                                                                          
Query: 590    catcgccgtcctcagcaagggcgaactgtcgcagggctcgacttactgggcccagggcgg 649
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126756 catcgccgtcctcagcaagggcgaactgtcgcagggctcgacttactgggcccagggcgg 126697

                                                   
Query: 650    cgtggccgccgtgctggacgataccgacaccgtggaa 686
              |||||||||||||||||||||||||||||||||||||
Sbjct: 126696 cgtggccgccgtgctggacgataccgacaccgtggaa 126660




 Score = 34.2 bits (17), Expect = 0.22
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                               
Query: 66     tgctgatcctgttcctg 82
              |||||||||||||||||
Sbjct: 270528 tgctgatcctgttcctg 270544




 Score = 34.2 bits (17), Expect = 0.22
 Identities = 20/21 (95%)
 Strand = Plus / Plus

                                    
Query: 645     ggcggcgtggccgccgtgctg 665
               |||||||||||||||| ||||
Sbjct: 1394221 ggcggcgtggccgccgggctg 1394241




 Score = 34.2 bits (17), Expect = 0.22
 Identities = 17/17 (100%)
 Strand = Plus / Minus

                                
Query: 542     cggcgccgccggcctga 558
               |||||||||||||||||
Sbjct: 2683546 cggcgccgccggcctga 2683530




 Score = 34.2 bits (17), Expect = 0.22
 Identities = 20/21 (95%)
 Strand = Plus / Plus

                                    
Query: 645     ggcggcgtggccgccgtgctg 665
               |||||||||||||||| ||||
Sbjct: 4142849 ggcggcgtggccgccgggctg 4142869




 Score = 34.2 bits (17), Expect = 0.22
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                                
Query: 541     gcggcgccgccggcctg 557
               |||||||||||||||||
Sbjct: 5288520 gcggcgccgccggcctg 5288536




 Score = 34.2 bits (17), Expect = 0.22
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                                
Query: 649     gcgtggccgccgtgctg 665
               |||||||||||||||||
Sbjct: 5693821 gcgtggccgccgtgctg 5693837




 Score = 32.2 bits (16), Expect = 0.88
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                               
Query: 583     acctgcgcatcgccgt 598
               ||||||||||||||||
Sbjct: 1719326 acctgcgcatcgccgt 1719341




 Score = 32.2 bits (16), Expect = 0.88
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                               
Query: 652     tggccgccgtgctgga 667
               ||||||||||||||||
Sbjct: 1744598 tggccgccgtgctgga 1744613




 Score = 32.2 bits (16), Expect = 0.88
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                               
Query: 534     atcggcagcggcgccg 549
               ||||||||||||||||
Sbjct: 1791598 atcggcagcggcgccg 1791583




 Score = 32.2 bits (16), Expect = 0.88
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                               
Query: 542     cggcgccgccggcctg 557
               ||||||||||||||||
Sbjct: 2097824 cggcgccgccggcctg 2097809




 Score = 32.2 bits (16), Expect = 0.88
 Identities = 19/20 (95%)
 Strand = Plus / Minus

                                   
Query: 576     ccggaacacctgcgcatcgc 595
               ||||||||||||||| ||||
Sbjct: 2248675 ccggaacacctgcgcctcgc 2248656




 Score = 32.2 bits (16), Expect = 0.88
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                               
Query: 534     atcggcagcggcgccg 549
               ||||||||||||||||
Sbjct: 3971541 atcggcagcggcgccg 3971526




 Score = 32.2 bits (16), Expect = 0.88
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                               
Query: 542     cggcgccgccggcctg 557
               ||||||||||||||||
Sbjct: 4352031 cggcgccgccggcctg 4352016




 Score = 32.2 bits (16), Expect = 0.88
 Identities = 22/24 (91%)
 Strand = Plus / Plus

                                       
Query: 72      tcctgttcctgggttagcatgaaa 95
               |||||||||||||| ||| |||||
Sbjct: 5127664 tcctgttcctgggtcagcctgaaa 5127687




 Score = 32.2 bits (16), Expect = 0.88
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                               
Query: 533     catcggcagcggcgcc 548
               ||||||||||||||||
Sbjct: 5251774 catcggcagcggcgcc 5251789




 Score = 32.2 bits (16), Expect = 0.88
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                               
Query: 527     actggtcatcggcagc 542
               ||||||||||||||||
Sbjct: 5458208 actggtcatcggcagc 5458223




 Score = 32.2 bits (16), Expect = 0.88
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                               
Query: 541     gcggcgccgccggcct 556
               ||||||||||||||||
Sbjct: 5541597 gcggcgccgccggcct 5541582




 Score = 32.2 bits (16), Expect = 0.88
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                               
Query: 542     cggcgccgccggcctg 557
               ||||||||||||||||
Sbjct: 5847414 cggcgccgccggcctg 5847429




 Score = 32.2 bits (16), Expect = 0.88
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                               
Query: 98      tcctcttcgaacctgg 113
               ||||||||||||||||
Sbjct: 6118300 tcctcttcgaacctgg 6118285




 Score = 32.2 bits (16), Expect = 0.88
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                               
Query: 55      gttcaaccagttgctg 70
               ||||||||||||||||
Sbjct: 6160414 gttcaaccagttgctg 6160399




 Score = 32.2 bits (16), Expect = 0.88
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                               
Query: 530     ggtcatcggcagcggc 545
               ||||||||||||||||
Sbjct: 6170527 ggtcatcggcagcggc 6170512




 Score = 30.2 bits (15), Expect = 3.5
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                             
Query: 541    gcggcgccgccggcc 555
              |||||||||||||||
Sbjct: 111142 gcggcgccgccggcc 111128




 Score = 30.2 bits (15), Expect = 3.5
 Identities = 18/19 (94%)
 Strand = Plus / Plus

                                 
Query: 534    atcggcagcggcgccgccg 552
              |||||||||||| ||||||
Sbjct: 250368 atcggcagcggcaccgccg 250386




 Score = 30.2 bits (15), Expect = 3.5
 Identities = 18/19 (94%)
 Strand = Plus / Plus

                                 
Query: 643    agggcggcgtggccgccgt 661
              |||| ||||||||||||||
Sbjct: 306169 agggtggcgtggccgccgt 306187




 Score = 30.2 bits (15), Expect = 3.5
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                             
Query: 662    gctggacgataccga 676
              |||||||||||||||
Sbjct: 355201 gctggacgataccga 355187




 Score = 30.2 bits (15), Expect = 3.5
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                             
Query: 532    tcatcggcagcggcg 546
              |||||||||||||||
Sbjct: 441118 tcatcggcagcggcg 441132




 Score = 30.2 bits (15), Expect = 3.5
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                             
Query: 535    tcggcagcggcgccg 549
              |||||||||||||||
Sbjct: 660685 tcggcagcggcgccg 660671




 Score = 30.2 bits (15), Expect = 3.5
 Identities = 18/19 (94%)
 Strand = Plus / Plus

                                 
Query: 536    cggcagcggcgccgccggc 554
              ||||||||||||| |||||
Sbjct: 796368 cggcagcggcgccaccggc 796386




 Score = 30.2 bits (15), Expect = 3.5
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                             
Query: 124    agcgtcccagcgaat 138
              |||||||||||||||
Sbjct: 994308 agcgtcccagcgaat 994322




 Score = 30.2 bits (15), Expect = 3.5
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 650     cgtggccgccgtgct 664
               |||||||||||||||
Sbjct: 1147930 cgtggccgccgtgct 1147916




 Score = 30.2 bits (15), Expect = 3.5
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 541     gcggcgccgccggcc 555
               |||||||||||||||
Sbjct: 1189257 gcggcgccgccggcc 1189243




 Score = 30.2 bits (15), Expect = 3.5
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 653     ggccgccgtgctgga 667
               |||||||||||||||
Sbjct: 1393459 ggccgccgtgctgga 1393473




 Score = 30.2 bits (15), Expect = 3.5
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 584     cctgcgcatcgccgt 598
               |||||||||||||||
Sbjct: 1478277 cctgcgcatcgccgt 1478291




 Score = 30.2 bits (15), Expect = 3.5
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 423     ggaccggcagcgggg 437
               |||||||||||||||
Sbjct: 1643387 ggaccggcagcgggg 1643401




 Score = 30.2 bits (15), Expect = 3.5
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 541     gcggcgccgccggcc 555
               |||||||||||||||
Sbjct: 1698047 gcggcgccgccggcc 1698033




 Score = 30.2 bits (15), Expect = 3.5
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 538     gcagcggcgccgccg 552
               |||||||||||||||
Sbjct: 1825930 gcagcggcgccgccg 1825944




 Score = 30.2 bits (15), Expect = 3.5
 Identities = 18/19 (94%)
 Strand = Plus / Plus

                                  
Query: 536     cggcagcggcgccgccggc 554
               ||||||||||||| |||||
Sbjct: 1999507 cggcagcggcgcccccggc 1999525




 Score = 30.2 bits (15), Expect = 3.5
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 583     acctgcgcatcgccg 597
               |||||||||||||||
Sbjct: 2163071 acctgcgcatcgccg 2163085




 Score = 30.2 bits (15), Expect = 3.5
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 69      tgatcctgttcctgg 83
               |||||||||||||||
Sbjct: 2749233 tgatcctgttcctgg 2749219




 Score = 30.2 bits (15), Expect = 3.5
 Identities = 21/23 (91%)
 Strand = Plus / Minus

                                      
Query: 532     tcatcggcagcggcgccgccggc 554
               |||||| || |||||||||||||
Sbjct: 3153763 tcatcgtcaccggcgccgccggc 3153741




 Score = 30.2 bits (15), Expect = 3.5
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 367     ctacatcgccccgct 381
               |||||||||||||||
Sbjct: 3222058 ctacatcgccccgct 3222044




 Score = 30.2 bits (15), Expect = 3.5
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 654     gccgccgtgctggac 668
               |||||||||||||||
Sbjct: 3656565 gccgccgtgctggac 3656579




 Score = 30.2 bits (15), Expect = 3.5
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 66      tgctgatcctgttcc 80
               |||||||||||||||
Sbjct: 3667983 tgctgatcctgttcc 3667997




 Score = 30.2 bits (15), Expect = 3.5
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 645     ggcggcgtggccgcc 659
               |||||||||||||||
Sbjct: 3821900 ggcggcgtggccgcc 3821914




 Score = 30.2 bits (15), Expect = 3.5
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 451     ccgccaggcccttct 465
               |||||||||||||||
Sbjct: 3840267 ccgccaggcccttct 3840253




 Score = 30.2 bits (15), Expect = 3.5
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 450     gccgccaggcccttc 464
               |||||||||||||||
Sbjct: 3845176 gccgccaggcccttc 3845190




 Score = 30.2 bits (15), Expect = 3.5
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 528     ctggtcatcggcagc 542
               |||||||||||||||
Sbjct: 3874796 ctggtcatcggcagc 3874810




 Score = 30.2 bits (15), Expect = 3.5
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 583     acctgcgcatcgccg 597
               |||||||||||||||
Sbjct: 4061742 acctgcgcatcgccg 4061756




 Score = 30.2 bits (15), Expect = 3.5
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 653     ggccgccgtgctgga 667
               |||||||||||||||
Sbjct: 4142089 ggccgccgtgctgga 4142103




 Score = 30.2 bits (15), Expect = 3.5
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 542     cggcgccgccggcct 556
               |||||||||||||||
Sbjct: 4275332 cggcgccgccggcct 4275346




 Score = 30.2 bits (15), Expect = 3.5
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 641     ccagggcggcgtggc 655
               |||||||||||||||
Sbjct: 4793351 ccagggcggcgtggc 4793337




 Score = 30.2 bits (15), Expect = 3.5
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 540     agcggcgccgccggc 554
               |||||||||||||||
Sbjct: 4982756 agcggcgccgccggc 4982742




 Score = 30.2 bits (15), Expect = 3.5
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 532     tcatcggcagcggcg 546
               |||||||||||||||
Sbjct: 4985115 tcatcggcagcggcg 4985129




 Score = 30.2 bits (15), Expect = 3.5
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 584     cctgcgcatcgccgt 598
               |||||||||||||||
Sbjct: 4988189 cctgcgcatcgccgt 4988203




 Score = 30.2 bits (15), Expect = 3.5
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 557     gagtctggccttgac 571
               |||||||||||||||
Sbjct: 5184775 gagtctggccttgac 5184761




 Score = 30.2 bits (15), Expect = 3.5
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 492     atggcgtggacaagc 506
               |||||||||||||||
Sbjct: 5218716 atggcgtggacaagc 5218702




 Score = 30.2 bits (15), Expect = 3.5
 Identities = 18/19 (94%)
 Strand = Plus / Minus

                                  
Query: 641     ccagggcggcgtggccgcc 659
               ||||||||||| |||||||
Sbjct: 5277457 ccagggcggcgcggccgcc 5277439




 Score = 30.2 bits (15), Expect = 3.5
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 531     gtcatcggcagcggc 545
               |||||||||||||||
Sbjct: 5601407 gtcatcggcagcggc 5601393




 Score = 30.2 bits (15), Expect = 3.5
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 650     cgtggccgccgtgct 664
               |||||||||||||||
Sbjct: 5753470 cgtggccgccgtgct 5753456




 Score = 30.2 bits (15), Expect = 3.5
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 645     ggcggcgtggccgcc 659
               |||||||||||||||
Sbjct: 5889674 ggcggcgtggccgcc 5889688




 Score = 30.2 bits (15), Expect = 3.5
 Identities = 18/19 (94%)
 Strand = Plus / Plus

                                  
Query: 536     cggcagcggcgccgccggc 554
               ||||||||||| |||||||
Sbjct: 5910960 cggcagcggcggcgccggc 5910978




 Score = 30.2 bits (15), Expect = 3.5
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 225     ggccccggacatcgt 239
               |||||||||||||||
Sbjct: 5963187 ggccccggacatcgt 5963201




 Score = 30.2 bits (15), Expect = 3.5
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 369     acatcgccccgctct 383
               |||||||||||||||
Sbjct: 5967359 acatcgccccgctct 5967373




 Score = 30.2 bits (15), Expect = 3.5
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 617     gtcgcagggctcgac 631
               |||||||||||||||
Sbjct: 6075475 gtcgcagggctcgac 6075461




 Score = 30.2 bits (15), Expect = 3.5
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 544     gcgccgccggcctga 558
               |||||||||||||||
Sbjct: 6224788 gcgccgccggcctga 6224774




  Database: pa14
    Posted date:  Jan 15, 2004  3:01 PM
  Number of letters in database: 6,534,396
  Number of sequences in database:  1
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6209
Number of Sequences: 1
Number of extensions: 6209
Number of successful extensions: 67
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 67
length of query: 686
length of database: 6,534,396
effective HSP length: 16
effective length of query: 670
effective length of database: 6,534,380
effective search space: 4378034600
effective search space used: 4378034600
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)