BLAST Search Results

BLASTN 2.2.26 [Sep-21-2011]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Database: pa14 
           1 sequences; 6,534,396 total letters



Query= 
         (500 letters)

Distribution of 39 Blast Hits on the Query Sequence



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GCTS_68                                                           850   0.0   

>GCTS_68 
          Length = 6534396

 Score =  850 bits (429), Expect = 0.0
 Identities = 429/429 (100%)
 Strand = Plus / Minus

                                                                          
Query: 58     cgcgaatattccttggactaatttccgacaaaccggaaaaacccatccataggggaagtt 117
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378759 cgcgaatattccttggactaatttccgacaaaccggaaaaacccatccataggggaagtt 378700

                                                                          
Query: 118    aagagcagctcttctgcccttctgctcttctgagcttcagtcggataaggagctggaatg 177
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378699 aagagcagctcttctgcccttctgctcttctgagcttcagtcggataaggagctggaatg 378640

                                                                          
Query: 178    tttatcgaggccgccatagtcatttacgctctggaactcgatatttccagaaacgccggg 237
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378639 tttatcgaggccgccatagtcatttacgctctggaactcgatatttccagaaacgccggg 378580

                                                                          
Query: 238    gggagttcccttgatttcgaatcggcgactcgacttcggcgcgaccatgtcggcatcaac 297
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378579 gggagttcccttgatttcgaatcggcgactcgacttcggcgcgaccatgtcggcatcaac 378520

                                                                          
Query: 298    gacataggaggcattgccagcttttaatttcacgttggcgaaagagacatgaaacgcagt 357
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378519 gacataggaggcattgccagcttttaatttcacgttggcgaaagagacatgaaacgcagt 378460

                                                                          
Query: 358    atcgttggaaacttcgacaaccgacttacctccctgccgaacaagacgccagatcaactt 417
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378459 atcgttggaaacttcgacaaccgacttacctccctgccgaacaagacgccagatcaactt 378400

                                                                          
Query: 418    tccaggcgcttcggcggaagttcccgacaagttatcggggcggtagaagaccttgatacg 477
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378399 tccaggcgcttcggcggaagttcccgacaagttatcggggcggtagaagaccttgatacg 378340

                       
Query: 478    ctggcgcaa 486
              |||||||||
Sbjct: 378339 ctggcgcaa 378331




 Score = 32.2 bits (16), Expect = 0.64
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                              
Query: 389    ccctgccgaacaagac 404
              ||||||||||||||||
Sbjct: 392576 ccctgccgaacaagac 392591




 Score = 32.2 bits (16), Expect = 0.64
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                               
Query: 287     tcggcatcaacgacat 302
               ||||||||||||||||
Sbjct: 2893859 tcggcatcaacgacat 2893874




 Score = 32.2 bits (16), Expect = 0.64
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                               
Query: 270     acttcggcgcgaccat 285
               ||||||||||||||||
Sbjct: 2981037 acttcggcgcgaccat 2981052




 Score = 30.2 bits (15), Expect = 2.5
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                             
Query: 264    gactcgacttcggcg 278
              |||||||||||||||
Sbjct: 700434 gactcgacttcggcg 700448




 Score = 30.2 bits (15), Expect = 2.5
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                             
Query: 271    cttcggcgcgaccat 285
              |||||||||||||||
Sbjct: 946452 cttcggcgcgaccat 946438




 Score = 30.2 bits (15), Expect = 2.5
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 424     cgcttcggcggaagt 438
               |||||||||||||||
Sbjct: 1026502 cgcttcggcggaagt 1026516




 Score = 30.2 bits (15), Expect = 2.5
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 429     cggcggaagttcccg 443
               |||||||||||||||
Sbjct: 1068859 cggcggaagttcccg 1068845




 Score = 30.2 bits (15), Expect = 2.5
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 280     gaccatgtcggcatc 294
               |||||||||||||||
Sbjct: 2857509 gaccatgtcggcatc 2857523




 Score = 30.2 bits (15), Expect = 2.5
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 415     ctttccaggcgcttc 429
               |||||||||||||||
Sbjct: 3393408 ctttccaggcgcttc 3393422




 Score = 30.2 bits (15), Expect = 2.5
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 478     ctggcgcaacatcat 492
               |||||||||||||||
Sbjct: 5403793 ctggcgcaacatcat 5403807




 Score = 28.2 bits (14), Expect = 9.9
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                            
Query: 427    ttcggcggaagttc 440
              ||||||||||||||
Sbjct: 868494 ttcggcggaagttc 868507




 Score = 28.2 bits (14), Expect = 9.9
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                            
Query: 276    gcgcgaccatgtcg 289
              ||||||||||||||
Sbjct: 879487 gcgcgaccatgtcg 879500




 Score = 28.2 bits (14), Expect = 9.9
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                             
Query: 281     accatgtcggcatc 294
               ||||||||||||||
Sbjct: 1208839 accatgtcggcatc 1208826




 Score = 28.2 bits (14), Expect = 9.9
 Identities = 17/18 (94%)
 Strand = Plus / Plus

                                 
Query: 271     cttcggcgcgaccatgtc 288
               ||||||||||| ||||||
Sbjct: 1225635 cttcggcgcgaacatgtc 1225652




 Score = 28.2 bits (14), Expect = 9.9
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                             
Query: 475     acgctggcgcaaca 488
               ||||||||||||||
Sbjct: 1419855 acgctggcgcaaca 1419868




 Score = 28.2 bits (14), Expect = 9.9
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                             
Query: 420     caggcgcttcggcg 433
               ||||||||||||||
Sbjct: 1706403 caggcgcttcggcg 1706390




 Score = 28.2 bits (14), Expect = 9.9
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                             
Query: 165     aggagctggaatgt 178
               ||||||||||||||
Sbjct: 1747903 aggagctggaatgt 1747890




 Score = 28.2 bits (14), Expect = 9.9
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                             
Query: 257     aatcggcgactcga 270
               ||||||||||||||
Sbjct: 2589121 aatcggcgactcga 2589108




 Score = 28.2 bits (14), Expect = 9.9
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                             
Query: 422     ggcgcttcggcgga 435
               ||||||||||||||
Sbjct: 2600865 ggcgcttcggcgga 2600878




 Score = 28.2 bits (14), Expect = 9.9
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                             
Query: 487     catcatctgcaagc 500
               ||||||||||||||
Sbjct: 2628003 catcatctgcaagc 2628016




 Score = 28.2 bits (14), Expect = 9.9
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                             
Query: 393     gccgaacaagacgc 406
               ||||||||||||||
Sbjct: 3302269 gccgaacaagacgc 3302256




 Score = 28.2 bits (14), Expect = 9.9
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                             
Query: 203     acgctctggaactc 216
               ||||||||||||||
Sbjct: 3493830 acgctctggaactc 3493843




 Score = 28.2 bits (14), Expect = 9.9
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                             
Query: 457     gcggtagaagacct 470
               ||||||||||||||
Sbjct: 3510950 gcggtagaagacct 3510937




 Score = 28.2 bits (14), Expect = 9.9
 Identities = 17/18 (94%)
 Strand = Plus / Minus

                                 
Query: 422     ggcgcttcggcggaagtt 439
               |||||| |||||||||||
Sbjct: 3737451 ggcgctgcggcggaagtt 3737434




 Score = 28.2 bits (14), Expect = 9.9
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                             
Query: 272     ttcggcgcgaccat 285
               ||||||||||||||
Sbjct: 3932832 ttcggcgcgaccat 3932845




 Score = 28.2 bits (14), Expect = 9.9
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                             
Query: 270     acttcggcgcgacc 283
               ||||||||||||||
Sbjct: 3977949 acttcggcgcgacc 3977962




 Score = 28.2 bits (14), Expect = 9.9
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                             
Query: 273     tcggcgcgaccatg 286
               ||||||||||||||
Sbjct: 4061451 tcggcgcgaccatg 4061464




 Score = 28.2 bits (14), Expect = 9.9
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                             
Query: 288     cggcatcaacgaca 301
               ||||||||||||||
Sbjct: 4074267 cggcatcaacgaca 4074254




 Score = 28.2 bits (14), Expect = 9.9
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                             
Query: 232     gccggggggagttc 245
               ||||||||||||||
Sbjct: 4149372 gccggggggagttc 4149385




 Score = 28.2 bits (14), Expect = 9.9
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                             
Query: 268     cgacttcggcgcga 281
               ||||||||||||||
Sbjct: 4346506 cgacttcggcgcga 4346519




 Score = 28.2 bits (14), Expect = 9.9
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                             
Query: 118     aagagcagctcttc 131
               ||||||||||||||
Sbjct: 4456195 aagagcagctcttc 4456208




 Score = 28.2 bits (14), Expect = 9.9
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                             
Query: 420     caggcgcttcggcg 433
               ||||||||||||||
Sbjct: 4544465 caggcgcttcggcg 4544452




 Score = 28.2 bits (14), Expect = 9.9
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                             
Query: 271     cttcggcgcgacca 284
               ||||||||||||||
Sbjct: 4903040 cttcggcgcgacca 4903027




 Score = 28.2 bits (14), Expect = 9.9
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                             
Query: 273     tcggcgcgaccatg 286
               ||||||||||||||
Sbjct: 5215188 tcggcgcgaccatg 5215175




 Score = 28.2 bits (14), Expect = 9.9
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                             
Query: 457     gcggtagaagacct 470
               ||||||||||||||
Sbjct: 5225621 gcggtagaagacct 5225608




 Score = 28.2 bits (14), Expect = 9.9
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                             
Query: 472     gatacgctggcgca 485
               ||||||||||||||
Sbjct: 5368279 gatacgctggcgca 5368266




 Score = 28.2 bits (14), Expect = 9.9
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                             
Query: 258     atcggcgactcgac 271
               ||||||||||||||
Sbjct: 5617877 atcggcgactcgac 5617890




 Score = 28.2 bits (14), Expect = 9.9
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                             
Query: 340     agagacatgaaacg 353
               ||||||||||||||
Sbjct: 6186000 agagacatgaaacg 6185987




  Database: pa14
    Posted date:  Jan 15, 2004  3:01 PM
  Number of letters in database: 6,534,396
  Number of sequences in database:  1
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2235
Number of Sequences: 1
Number of extensions: 2235
Number of successful extensions: 39
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 39
length of query: 500
length of database: 6,534,396
effective HSP length: 16
effective length of query: 484
effective length of database: 6,534,380
effective search space: 3162639920
effective search space used: 3162639920
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 14 (28.2 bits)