BLASTN 2.2.26 [Sep-21-2011]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Database: pa14 
           1 sequences; 6,534,396 total letters



Query= 
         (227 letters)

Distribution of 63 Blast Hits on the Query Sequence 



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GCTS_68                                                           180   5e-46 



>GCTS_68 
          Length = 6534396

 Score =  180 bits (91), Expect = 5e-46
 Identities = 133/147 (90%)
 Strand = Plus / Plus

                                                                           
Query: 77      ttcgccgaggtgatggagtttctcgtcgagtcgaaggtgaacggcatcgtgatcggcggc 136
               |||||||||||  |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 4116409 ttcgccgaggtcctggagtttctcgtcgagtcgaaggtgcacggcatcgtgatcggcggc 4116468

                                                                           
Query: 137     tccaccggcgagtactacgcgcacaccgccgaggaacgtctggtgctcgcctgccaagcc 196
               |||||||||||||||||||||||||||||||||||||| ||||  ||||||  ||| |||
Sbjct: 4116469 tccaccggcgagtactacgcgcacaccgccgaggaacgcctggccctcgccgcccacgcc 4116528

                                          
Query: 197     aattaattcatctccgggcgcctgccg 223
               |   || ||||| ||||||||||||||
Sbjct: 4116529 agcgaagtcatcgccgggcgcctgccg 4116555






 Score = 34.2 bits (17), Expect = 0.071
 Identities = 17/17 (100%)
 Strand = Plus / Minus

                                
Query: 210     ccgggcgcctgccgttg 226
               |||||||||||||||||
Sbjct: 3943844 ccgggcgcctgccgttg 3943828






 Score = 34.2 bits (17), Expect = 0.071
 Identities = 20/21 (95%)
 Strand = Plus / Minus

                                    
Query: 128     atcggcggctccaccggcgag 148
               |||||||||||||||| ||||
Sbjct: 6171091 atcggcggctccaccgccgag 6171071






 Score = 32.2 bits (16), Expect = 0.28
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                               
Query: 130     cggcggctccaccggc 145
               ||||||||||||||||
Sbjct: 3082129 cggcggctccaccggc 3082144






 Score = 32.2 bits (16), Expect = 0.28
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                               
Query: 19      tatctatacccccgcc 34
               ||||||||||||||||
Sbjct: 4116351 tatctatacccccgcc 4116366






 Score = 32.2 bits (16), Expect = 0.28
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                               
Query: 118     cggcatcgtgatcggc 133
               ||||||||||||||||
Sbjct: 4191132 cggcatcgtgatcggc 4191117






 Score = 32.2 bits (16), Expect = 0.28
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                               
Query: 129     tcggcggctccaccgg 144
               ||||||||||||||||
Sbjct: 6290659 tcggcggctccaccgg 6290674






 Score = 30.2 bits (15), Expect = 1.1
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                             
Query: 103    cgagtcgaaggtgaa 117
              |||||||||||||||
Sbjct: 142377 cgagtcgaaggtgaa 142363






 Score = 30.2 bits (15), Expect = 1.1
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                             
Query: 177    tggtgctcgcctgcc 191
              |||||||||||||||
Sbjct: 625909 tggtgctcgcctgcc 625895






 Score = 30.2 bits (15), Expect = 1.1
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                             
Query: 122    atcgtgatcggcggc 136
              |||||||||||||||
Sbjct: 900339 atcgtgatcggcggc 900353






 Score = 30.2 bits (15), Expect = 1.1
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 78      tcgccgaggtgatgg 92
               |||||||||||||||
Sbjct: 1188915 tcgccgaggtgatgg 1188929






 Score = 30.2 bits (15), Expect = 1.1
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 111     aggtgaacggcatcg 125
               |||||||||||||||
Sbjct: 1842416 aggtgaacggcatcg 1842402






 Score = 30.2 bits (15), Expect = 1.1
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 178     ggtgctcgcctgcca 192
               |||||||||||||||
Sbjct: 2158145 ggtgctcgcctgcca 2158159






 Score = 30.2 bits (15), Expect = 1.1
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 133     cggctccaccggcga 147
               |||||||||||||||
Sbjct: 2323328 cggctccaccggcga 2323342






 Score = 30.2 bits (15), Expect = 1.1
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 77      ttcgccgaggtgatg 91
               |||||||||||||||
Sbjct: 2374301 ttcgccgaggtgatg 2374287






 Score = 30.2 bits (15), Expect = 1.1
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 122     atcgtgatcggcggc 136
               |||||||||||||||
Sbjct: 2871651 atcgtgatcggcggc 2871665






 Score = 30.2 bits (15), Expect = 1.1
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 111     aggtgaacggcatcg 125
               |||||||||||||||
Sbjct: 2956093 aggtgaacggcatcg 2956079






 Score = 30.2 bits (15), Expect = 1.1
 Identities = 18/19 (94%)
 Strand = Plus / Plus

                                  
Query: 162     ccgccgaggaacgtctggt 180
               ||||||||||||| |||||
Sbjct: 3064255 ccgccgaggaacgcctggt 3064273






 Score = 30.2 bits (15), Expect = 1.1
 Identities = 18/19 (94%)
 Strand = Plus / Plus

                                  
Query: 118     cggcatcgtgatcggcggc 136
               ||||| |||||||||||||
Sbjct: 4310379 cggcaacgtgatcggcggc 4310397






 Score = 30.2 bits (15), Expect = 1.1
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 213     ggcgcctgccgttgg 227
               |||||||||||||||
Sbjct: 4947847 ggcgcctgccgttgg 4947833






 Score = 30.2 bits (15), Expect = 1.1
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 109     gaaggtgaacggcat 123
               |||||||||||||||
Sbjct: 5694482 gaaggtgaacggcat 5694468






 Score = 30.2 bits (15), Expect = 1.1
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 144     gcgagtactacgcgc 158
               |||||||||||||||
Sbjct: 5793139 gcgagtactacgcgc 5793125






 Score = 28.2 bits (14), Expect = 4.4
 Identities = 17/18 (94%)
 Strand = Plus / Minus

                              
Query: 204  tcatctccgggcgcctgc 221
            ||||| ||||||||||||
Sbjct: 2307 tcatcgccgggcgcctgc 2290






 Score = 28.2 bits (14), Expect = 4.4
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                           
Query: 78    tcgccgaggtgatg 91
             ||||||||||||||
Sbjct: 44195 tcgccgaggtgatg 44208






 Score = 28.2 bits (14), Expect = 4.4
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                            
Query: 109    gaaggtgaacggca 122
              ||||||||||||||
Sbjct: 103577 gaaggtgaacggca 103564






 Score = 28.2 bits (14), Expect = 4.4
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                            
Query: 125    gtgatcggcggctc 138
              ||||||||||||||
Sbjct: 195950 gtgatcggcggctc 195937






 Score = 28.2 bits (14), Expect = 4.4
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                            
Query: 142    cggcgagtactacg 155
              ||||||||||||||
Sbjct: 222768 cggcgagtactacg 222755






 Score = 28.2 bits (14), Expect = 4.4
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                            
Query: 176    ctggtgctcgcctg 189
              ||||||||||||||
Sbjct: 231762 ctggtgctcgcctg 231775






 Score = 28.2 bits (14), Expect = 4.4
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                            
Query: 210    ccgggcgcctgccg 223
              ||||||||||||||
Sbjct: 267730 ccgggcgcctgccg 267743






 Score = 28.2 bits (14), Expect = 4.4
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                            
Query: 100    cgtcgagtcgaagg 113
              ||||||||||||||
Sbjct: 491740 cgtcgagtcgaagg 491753






 Score = 28.2 bits (14), Expect = 4.4
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                            
Query: 210    ccgggcgcctgccg 223
              ||||||||||||||
Sbjct: 500296 ccgggcgcctgccg 500309






 Score = 28.2 bits (14), Expect = 4.4
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                            
Query: 77     ttcgccgaggtgat 90
              ||||||||||||||
Sbjct: 723510 ttcgccgaggtgat 723523






 Score = 28.2 bits (14), Expect = 4.4
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                            
Query: 117    acggcatcgtgatc 130
              ||||||||||||||
Sbjct: 770546 acggcatcgtgatc 770533






 Score = 28.2 bits (14), Expect = 4.4
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                            
Query: 160    caccgccgaggaac 173
              ||||||||||||||
Sbjct: 925572 caccgccgaggaac 925559






 Score = 28.2 bits (14), Expect = 4.4
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                             
Query: 176     ctggtgctcgcctg 189
               ||||||||||||||
Sbjct: 1303771 ctggtgctcgcctg 1303784






 Score = 28.2 bits (14), Expect = 4.4
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                             
Query: 79      cgccgaggtgatgg 92
               ||||||||||||||
Sbjct: 1592371 cgccgaggtgatgg 1592358






 Score = 28.2 bits (14), Expect = 4.4
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                             
Query: 214     gcgcctgccgttgg 227
               ||||||||||||||
Sbjct: 1791446 gcgcctgccgttgg 1791433






 Score = 28.2 bits (14), Expect = 4.4
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                             
Query: 78      tcgccgaggtgatg 91
               ||||||||||||||
Sbjct: 1796679 tcgccgaggtgatg 1796692






 Score = 28.2 bits (14), Expect = 4.4
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                             
Query: 47      gcagcctgcccaag 60
               ||||||||||||||
Sbjct: 1798380 gcagcctgcccaag 1798393






 Score = 28.2 bits (14), Expect = 4.4
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                             
Query: 174     gtctggtgctcgcc 187
               ||||||||||||||
Sbjct: 1830016 gtctggtgctcgcc 1830029






 Score = 28.2 bits (14), Expect = 4.4
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                             
Query: 213     ggcgcctgccgttg 226
               ||||||||||||||
Sbjct: 2056064 ggcgcctgccgttg 2056051






 Score = 28.2 bits (14), Expect = 4.4
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                             
Query: 208     ctccgggcgcctgc 221
               ||||||||||||||
Sbjct: 2175790 ctccgggcgcctgc 2175777






 Score = 28.2 bits (14), Expect = 4.4
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                             
Query: 118     cggcatcgtgatcg 131
               ||||||||||||||
Sbjct: 2263485 cggcatcgtgatcg 2263498






 Score = 28.2 bits (14), Expect = 4.4
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                             
Query: 108     cgaaggtgaacggc 121
               ||||||||||||||
Sbjct: 2301726 cgaaggtgaacggc 2301739






 Score = 28.2 bits (14), Expect = 4.4
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                             
Query: 119     ggcatcgtgatcgg 132
               ||||||||||||||
Sbjct: 2728046 ggcatcgtgatcgg 2728033






 Score = 28.2 bits (14), Expect = 4.4
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                             
Query: 126     tgatcggcggctcc 139
               ||||||||||||||
Sbjct: 2932901 tgatcggcggctcc 2932888






 Score = 28.2 bits (14), Expect = 4.4
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                             
Query: 78      tcgccgaggtgatg 91
               ||||||||||||||
Sbjct: 3101036 tcgccgaggtgatg 3101049






 Score = 28.2 bits (14), Expect = 4.4
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                             
Query: 163     cgccgaggaacgtc 176
               ||||||||||||||
Sbjct: 3717698 cgccgaggaacgtc 3717685






 Score = 28.2 bits (14), Expect = 4.4
 Identities = 17/18 (94%)
 Strand = Plus / Minus

                                 
Query: 210     ccgggcgcctgccgttgg 227
               |||| |||||||||||||
Sbjct: 3741527 ccggccgcctgccgttgg 3741510






 Score = 28.2 bits (14), Expect = 4.4
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                             
Query: 130     cggcggctccaccg 143
               ||||||||||||||
Sbjct: 4078927 cggcggctccaccg 4078940






 Score = 28.2 bits (14), Expect = 4.4
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                             
Query: 133     cggctccaccggcg 146
               ||||||||||||||
Sbjct: 4136488 cggctccaccggcg 4136501






 Score = 28.2 bits (14), Expect = 4.4
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                             
Query: 177     tggtgctcgcctgc 190
               ||||||||||||||
Sbjct: 4239673 tggtgctcgcctgc 4239686






 Score = 28.2 bits (14), Expect = 4.4
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                             
Query: 118     cggcatcgtgatcg 131
               ||||||||||||||
Sbjct: 4334802 cggcatcgtgatcg 4334815






 Score = 28.2 bits (14), Expect = 4.4
 Identities = 17/18 (94%)
 Strand = Plus / Plus

                                 
Query: 128     atcggcggctccaccggc 145
               ||||||||||||| ||||
Sbjct: 4731104 atcggcggctccatcggc 4731121






 Score = 28.2 bits (14), Expect = 4.4
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                             
Query: 132     gcggctccaccggc 145
               ||||||||||||||
Sbjct: 4915406 gcggctccaccggc 4915419






 Score = 28.2 bits (14), Expect = 4.4
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                             
Query: 184     cgcctgccaagcca 197
               ||||||||||||||
Sbjct: 5450597 cgcctgccaagcca 5450584






 Score = 28.2 bits (14), Expect = 4.4
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                             
Query: 135     gctccaccggcgag 148
               ||||||||||||||
Sbjct: 5540499 gctccaccggcgag 5540486






 Score = 28.2 bits (14), Expect = 4.4
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                             
Query: 122     atcgtgatcggcgg 135
               ||||||||||||||
Sbjct: 5796115 atcgtgatcggcgg 5796102






 Score = 28.2 bits (14), Expect = 4.4
 Identities = 17/18 (94%)
 Strand = Plus / Minus

                                 
Query: 129     tcggcggctccaccggcg 146
               |||||| |||||||||||
Sbjct: 5997781 tcggcgcctccaccggcg 5997764






 Score = 28.2 bits (14), Expect = 4.4
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                             
Query: 160     caccgccgaggaac 173
               ||||||||||||||
Sbjct: 6148129 caccgccgaggaac 6148116






 Score = 28.2 bits (14), Expect = 4.4
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                             
Query: 162     ccgccgaggaacgt 175
               ||||||||||||||
Sbjct: 6268878 ccgccgaggaacgt 6268865






 Score = 28.2 bits (14), Expect = 4.4
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                             
Query: 111     aggtgaacggcatc 124
               ||||||||||||||
Sbjct: 6288322 aggtgaacggcatc 6288335






 Score = 28.2 bits (14), Expect = 4.4
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                             
Query: 123     tcgtgatcggcggc 136
               ||||||||||||||
Sbjct: 6415520 tcgtgatcggcggc 6415507






  Database: pa14
    Posted date:  Jan 15, 2004  3:01 PM
  Number of letters in database: 6,534,396
  Number of sequences in database:  1
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1954
Number of Sequences: 1
Number of extensions: 1954
Number of successful extensions: 64
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 63
length of query: 227
length of database: 6,534,396
effective HSP length: 15
effective length of query: 212
effective length of database: 6,534,381
effective search space: 1385288772
effective search space used: 1385288772
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 14 (28.2 bits)