BLASTN 2.2.26 [Sep-21-2011]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Database: pa14 
           1 sequences; 6,534,396 total letters



Query= (223 letters)

Distribution of 14 Blast Hits on the Query Sequence




                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GCTS_68                                                           234   4e-62 
>GCTS_68 
          Length = 6534396

 Score =  234 bits (118), Expect = 4e-62
 Identities = 127/130 (97%)
 Strand = Plus / Minus

                                                                          
Query: 94     ccggcgctcgaaggacagaaaatcggaagcgggggagaaatgcgcgctcatcgcacccac 153
              |||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct: 401193 ccggcgctcgaaggacagaaaatcggaagcggtggagaaatgcgcgctcagcgcacccac 401134

                                                                          
Query: 154    gaaacccaggcagagcgggacgaccacccagagaataaggaagggcccgcagcattccta 213
              ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 401133 gaaacccaggcagagcgggacgaccacccagagaagaaggaagggcccgcagcattccta 401074

                        
Query: 214    ggaaagctgc 223
              ||||||||||
Sbjct: 401073 ggaaagctgc 401064

 Score = 50.1 bits (25), Expect = 1e-06
 Identities = 25/25 (100%)
 Strand = Plus / Minus

                                       
Query: 47     tactaagaagaaccgcaccgaccat 71
              |||||||||||||||||||||||||
Sbjct: 401240 tactaagaagaaccgcaccgaccat 401216

 Score = 30.2 bits (15), Expect = 1.1
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 148     acccacgaaacccag 162
               |||||||||||||||
Sbjct: 5023435 acccacgaaacccag 5023449

 Score = 30.2 bits (15), Expect = 1.1
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 175     gaccacccagagaat 189
               |||||||||||||||
Sbjct: 5489091 gaccacccagagaat 5489105

 Score = 28.2 bits (14), Expect = 4.3
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                             
Query: 90      agagccggcgctcg 103
               ||||||||||||||
Sbjct: 1419751 agagccggcgctcg 1419738

 Score = 28.2 bits (14), Expect = 4.3
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                             
Query: 58      accgcaccgaccat 71
               ||||||||||||||
Sbjct: 2252044 accgcaccgaccat 2252057

 Score = 28.2 bits (14), Expect = 4.3
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                             
Query: 93      gccggcgctcgaag 106
               ||||||||||||||
Sbjct: 2831520 gccggcgctcgaag 2831533

 Score = 28.2 bits (14), Expect = 4.3
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                             
Query: 125     ggggagaaatgcgc 138
               ||||||||||||||
Sbjct: 3449597 ggggagaaatgcgc 3449584

 Score = 28.2 bits (14), Expect = 4.3
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                             
Query: 134     tgcgcgctcatcgc 147
               ||||||||||||||
Sbjct: 3599714 tgcgcgctcatcgc 3599727

 Score = 28.2 bits (14), Expect = 4.3
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                             
Query: 17      tagagaccggagac 30
               ||||||||||||||
Sbjct: 3674604 tagagaccggagac 3674617

 Score = 28.2 bits (14), Expect = 4.3
 Identities = 17/18 (94%)
 Strand = Plus / Minus

                                 
Query: 52      agaagaaccgcaccgacc 69
               |||||||||||| |||||
Sbjct: 4413522 agaagaaccgcaacgacc 4413505

 Score = 28.2 bits (14), Expect = 4.3
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                             
Query: 162     ggcagagcgggacg 175
               ||||||||||||||
Sbjct: 4637052 ggcagagcgggacg 4637065

 Score = 28.2 bits (14), Expect = 4.3
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                             
Query: 55      agaaccgcaccgac 68
               ||||||||||||||
Sbjct: 4797505 agaaccgcaccgac 4797492

 Score = 28.2 bits (14), Expect = 4.3
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                             
Query: 147     cacccacgaaaccc 160
               ||||||||||||||
Sbjct: 5345546 cacccacgaaaccc 5345559
  Database: pa14
    Posted date:  Jan 15, 2004  3:01 PM
  Number of letters in database: 6,534,396
  Number of sequences in database:  1
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 757
Number of Sequences: 1
Number of extensions: 757
Number of successful extensions: 14
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of query: 223
length of database: 6,534,396
effective HSP length: 15
effective length of query: 208
effective length of database: 6,534,381
effective search space: 1359151248
effective search space used: 1359151248
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 14 (28.2 bits)