BLASTN 2.2.26 [Sep-21-2011]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Database: pa14 
           1 sequences; 6,534,396 total letters



Query= (895 letters)

Distribution of 36 Blast Hits on the Query Sequence




                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GCTS_68                                                           868   0.0   
>GCTS_68 
          Length = 6534396

 Score =  868 bits (438), Expect = 0.0
 Identities = 459/466 (98%)
 Strand = Plus / Plus

                                                                         
Query: 60    tattcatgcaagcactcctcggaaccctcgccttgtcccggcgggggcaatggaaaagga 119
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 57019 tattcatgcaagcactcctcggaaccctcgccttgtcccggcgggggcaatggaaaagga 57078

                                                                         
Query: 120   tggggggcagcgattgtccgcctgcgggcgcacggctttcagcccggccatggatatccg 179
              |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 57079 aggggggcagcgattgtccgcctgcgggcgcacggctttcagcccggccatggatatccg 57138

                                                                         
Query: 180   tcagggcctgccctggcgggagtggaccaggcccttgttctttagcctggagaacaccgc 239
               |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 57139 gtagggcctgccctggcgggagtggaccaggcccttgttcttcagcctggagaacaccgc 57198

                                                                         
Query: 240   cagggtgcagtcgagtagcaggtggccgtcgcggttgtagcactcgacgcgggtgatctt 299
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 57199 cagggtgcagtcgagtagcaggtggccgtcgcggttgtagcactcgacgcgggtgatctt 57258

                                                                         
Query: 300   gcccgaagcgtcgcgaaggaaggcgatatggccgccctgggccaaggcgtgaagcgtccg 359
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 57259 gcccgaagcgtcgcgaaggaaggcgatatggccgccctgggccaaggcgtgaagcgtccg 57318

                                                                         
Query: 360   ttgttccggcttggaaacgttcatgtcggtagaacctgtaatcatcggtgtgacaacgcg 419
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 57319 ttgttccggcttggaaacgttcatgtcggtagaacctgtaatcatcggtgtgacaacgcg 57378

                                                                         
Query: 420   gcagcactgcgcgaaaaggcgtgtgcgagccatggcgaaggcagatacccggcgacacct 479
             ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 57379 gcagcactgcgcgaaaaggcgtgtgcgagccatggcgaaggcagataaccggcgacacct 57438

                                                           
Query: 480   cgtgcggaatgacgaagcggcggttatcggatgattactatctcca 525
             ||||||| ||||||||| ||||||||||||||||||||||||||||
Sbjct: 57439 cgtgcgggatgacgaagtggcggttatcggatgattactatctcca 57484

 Score = 36.2 bits (18), Expect = 0.074
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                 
Query: 256     agcaggtggccgtcgcgg 273
               ||||||||||||||||||
Sbjct: 5866417 agcaggtggccgtcgcgg 5866400

 Score = 34.2 bits (17), Expect = 0.29
 Identities = 23/25 (92%)
 Strand = Plus / Plus

                                      
Query: 560   aagcgtgctgcgatgccggagtcta 584
             |||||||||||||||| | ||||||
Sbjct: 57522 aagcgtgctgcgatgcggcagtcta 57546

 Score = 34.2 bits (17), Expect = 0.29
 Identities = 17/17 (100%)
 Strand = Plus / Minus

                                
Query: 146     ggcgcacggctttcagc 162
               |||||||||||||||||
Sbjct: 3097047 ggcgcacggctttcagc 3097031

 Score = 34.2 bits (17), Expect = 0.29
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                                
Query: 590     actggctcaagggacgg 606
               |||||||||||||||||
Sbjct: 4844470 actggctcaagggacgg 4844486

 Score = 34.2 bits (17), Expect = 0.29
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                                
Query: 239     ccagggtgcagtcgagt 255
               |||||||||||||||||
Sbjct: 6229867 ccagggtgcagtcgagt 6229883

 Score = 32.2 bits (16), Expect = 1.2
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                              
Query: 201    gtggaccaggcccttg 216
              ||||||||||||||||
Sbjct: 207279 gtggaccaggcccttg 207294

 Score = 32.2 bits (16), Expect = 1.2
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                               
Query: 328     tggccgccctgggcca 343
               ||||||||||||||||
Sbjct: 1031990 tggccgccctgggcca 1031975

 Score = 32.2 bits (16), Expect = 1.2
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                               
Query: 230     agaacaccgccagggt 245
               ||||||||||||||||
Sbjct: 1510640 agaacaccgccagggt 1510655

 Score = 32.2 bits (16), Expect = 1.2
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                               
Query: 287     cgcgggtgatcttgcc 302
               ||||||||||||||||
Sbjct: 2706551 cgcgggtgatcttgcc 2706566

 Score = 32.2 bits (16), Expect = 1.2
 Identities = 19/20 (95%)
 Strand = Plus / Plus

                                   
Query: 261     gtggccgtcgcggttgtagc 280
               ||||||||||||| ||||||
Sbjct: 4641732 gtggccgtcgcggctgtagc 4641751

 Score = 32.2 bits (16), Expect = 1.2
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                               
Query: 318     gaaggcgatatggccg 333
               ||||||||||||||||
Sbjct: 5651313 gaaggcgatatggccg 5651298

 Score = 32.2 bits (16), Expect = 1.2
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                               
Query: 261     gtggccgtcgcggttg 276
               ||||||||||||||||
Sbjct: 6417902 gtggccgtcgcggttg 6417887

 Score = 30.2 bits (15), Expect = 4.6
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                             
Query: 691    accgccctttttcat 705
              |||||||||||||||
Sbjct: 131355 accgccctttttcat 131369

 Score = 30.2 bits (15), Expect = 4.6
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                             
Query: 137    ccgcctgcgggcgca 151
              |||||||||||||||
Sbjct: 176581 ccgcctgcgggcgca 176567

 Score = 30.2 bits (15), Expect = 4.6
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                             
Query: 330    gccgccctgggccaa 344
              |||||||||||||||
Sbjct: 235735 gccgccctgggccaa 235749

 Score = 30.2 bits (15), Expect = 4.6
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                             
Query: 290    gggtgatcttgcccg 304
              |||||||||||||||
Sbjct: 417487 gggtgatcttgcccg 417473

 Score = 30.2 bits (15), Expect = 4.6
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                             
Query: 185    gcctgccctggcggg 199
              |||||||||||||||
Sbjct: 949075 gcctgccctggcggg 949061

 Score = 30.2 bits (15), Expect = 4.6
 Identities = 18/19 (94%)
 Strand = Plus / Plus

                                  
Query: 443     tgcgagccatggcgaaggc 461
               |||||||||||| ||||||
Sbjct: 1518277 tgcgagccatggtgaaggc 1518295

 Score = 30.2 bits (15), Expect = 4.6
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 262     tggccgtcgcggttg 276
               |||||||||||||||
Sbjct: 2162394 tggccgtcgcggttg 2162408

 Score = 30.2 bits (15), Expect = 4.6
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 425     actgcgcgaaaaggc 439
               |||||||||||||||
Sbjct: 2271825 actgcgcgaaaaggc 2271811

 Score = 30.2 bits (15), Expect = 4.6
 Identities = 18/19 (94%)
 Strand = Plus / Minus

                                  
Query: 330     gccgccctgggccaaggcg 348
               |||||||||||| ||||||
Sbjct: 2582710 gccgccctgggcgaaggcg 2582692

 Score = 30.2 bits (15), Expect = 4.6
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 448     gccatggcgaaggca 462
               |||||||||||||||
Sbjct: 2702709 gccatggcgaaggca 2702695

 Score = 30.2 bits (15), Expect = 4.6
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 317     ggaaggcgatatggc 331
               |||||||||||||||
Sbjct: 2798525 ggaaggcgatatggc 2798511

 Score = 30.2 bits (15), Expect = 4.6
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 256     agcaggtggccgtcg 270
               |||||||||||||||
Sbjct: 2825406 agcaggtggccgtcg 2825392

 Score = 30.2 bits (15), Expect = 4.6
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 263     ggccgtcgcggttgt 277
               |||||||||||||||
Sbjct: 3379498 ggccgtcgcggttgt 3379484

 Score = 30.2 bits (15), Expect = 4.6
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 157     ttcagcccggccatg 171
               |||||||||||||||
Sbjct: 3406594 ttcagcccggccatg 3406608

 Score = 30.2 bits (15), Expect = 4.6
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 226     ctggagaacaccgcc 240
               |||||||||||||||
Sbjct: 3636363 ctggagaacaccgcc 3636377

 Score = 30.2 bits (15), Expect = 4.6
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 226     ctggagaacaccgcc 240
               |||||||||||||||
Sbjct: 3686880 ctggagaacaccgcc 3686894

 Score = 30.2 bits (15), Expect = 4.6
 Identities = 18/19 (94%)
 Strand = Plus / Plus

                                  
Query: 330     gccgccctgggccaaggcg 348
               |||||||||||||| ||||
Sbjct: 3713219 gccgccctgggccagggcg 3713237

 Score = 30.2 bits (15), Expect = 4.6
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 159     cagcccggccatgga 173
               |||||||||||||||
Sbjct: 3790982 cagcccggccatgga 3790996

 Score = 30.2 bits (15), Expect = 4.6
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 687     ggggaccgccctttt 701
               |||||||||||||||
Sbjct: 4651932 ggggaccgccctttt 4651946

 Score = 30.2 bits (15), Expect = 4.6
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 329     ggccgccctgggcca 343
               |||||||||||||||
Sbjct: 4732241 ggccgccctgggcca 4732227

 Score = 30.2 bits (15), Expect = 4.6
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 264     gccgtcgcggttgta 278
               |||||||||||||||
Sbjct: 4950912 gccgtcgcggttgta 4950926

 Score = 30.2 bits (15), Expect = 4.6
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 288     gcgggtgatcttgcc 302
               |||||||||||||||
Sbjct: 5655295 gcgggtgatcttgcc 5655309

 Score = 30.2 bits (15), Expect = 4.6
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 224     gcctggagaacaccg 238
               |||||||||||||||
Sbjct: 6020375 gcctggagaacaccg 6020389
  Database: pa14
    Posted date:  Jan 15, 2004  3:01 PM
  Number of letters in database: 6,534,396
  Number of sequences in database:  1
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4644
Number of Sequences: 1
Number of extensions: 4644
Number of successful extensions: 36
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36
length of query: 895
length of database: 6,534,396
effective HSP length: 16
effective length of query: 879
effective length of database: 6,534,380
effective search space: 5743720020
effective search space used: 5743720020
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)