BLASTN 2.2.26 [Sep-21-2011]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Database: pa14 
           1 sequences; 6,534,396 total letters



Query= 
         (238 letters)

Distribution of 55 Blast Hits on the Query Sequence 



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GCTS_68                                                           305   1e-83 



>GCTS_68 
          Length = 6534396

 Score =  305 bits (154), Expect = 1e-83
 Identities = 154/154 (100%)
 Strand = Plus / Minus

                                                                           
Query: 49      tacacggccagcacgaagatgatcaggttgtagatcccgtcagaaatgatatccatcgtt 108
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6023427 tacacggccagcacgaagatgatcaggttgtagatcccgtcagaaatgatatccatcgtt 6023368

                                                                           
Query: 109     ttcaccggtcttcagggcgcaggcgcgaggcgtgcgcatttatcgttatcgaagcttccc 168
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6023367 ttcaccggtcttcagggcgcaggcgcgaggcgtgcgcatttatcgttatcgaagcttccc 6023308

                                                 
Query: 169     gacgcagcggctcagccgttcttgcgcaccgcct 202
               ||||||||||||||||||||||||||||||||||
Sbjct: 6023307 gacgcagcggctcagccgttcttgcgcaccgcct 6023274






 Score = 36.2 bits (18), Expect = 0.019
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                     
Query: 63      gaagatgatcaggttgtagatc 84
               |||||||| |||||||||||||
Sbjct: 3884047 gaagatgaacaggttgtagatc 3884068






 Score = 34.2 bits (17), Expect = 0.074
 Identities = 17/17 (100%)
 Strand = Plus / Minus

                               
Query: 118    cttcagggcgcaggcgc 134
              |||||||||||||||||
Sbjct: 351074 cttcagggcgcaggcgc 351058






 Score = 32.2 bits (16), Expect = 0.29
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                              
Query: 162    gcttcccgacgcagcg 177
              ||||||||||||||||
Sbjct: 422280 gcttcccgacgcagcg 422265






 Score = 32.2 bits (16), Expect = 0.29
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                               
Query: 113     ccggtcttcagggcgc 128
               ||||||||||||||||
Sbjct: 3622848 ccggtcttcagggcgc 3622833






 Score = 30.2 bits (15), Expect = 1.2
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                             
Query: 121    cagggcgcaggcgcg 135
              |||||||||||||||
Sbjct: 659276 cagggcgcaggcgcg 659290






 Score = 30.2 bits (15), Expect = 1.2
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 121     cagggcgcaggcgcg 135
               |||||||||||||||
Sbjct: 1890008 cagggcgcaggcgcg 1889994






 Score = 30.2 bits (15), Expect = 1.2
 Identities = 18/19 (94%)
 Strand = Plus / Minus

                                  
Query: 66      gatgatcaggttgtagatc 84
               ||||| |||||||||||||
Sbjct: 2320444 gatgaacaggttgtagatc 2320426






 Score = 30.2 bits (15), Expect = 1.2
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 171     cgcagcggctcagcc 185
               |||||||||||||||
Sbjct: 2474167 cgcagcggctcagcc 2474181






 Score = 30.2 bits (15), Expect = 1.2
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 188     tcttgcgcaccgcct 202
               |||||||||||||||
Sbjct: 3886911 tcttgcgcaccgcct 3886897






 Score = 30.2 bits (15), Expect = 1.2
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 68      tgatcaggttgtaga 82
               |||||||||||||||
Sbjct: 4606798 tgatcaggttgtaga 4606784






 Score = 30.2 bits (15), Expect = 1.2
 Identities = 21/23 (91%)
 Strand = Plus / Plus

                                      
Query: 206     cgccgggcacatcatctgcaggc 228
               |||||||||||||| | ||||||
Sbjct: 4758328 cgccgggcacatcaccagcaggc 4758350






 Score = 30.2 bits (15), Expect = 1.2
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 113     ccggtcttcagggcg 127
               |||||||||||||||
Sbjct: 5125753 ccggtcttcagggcg 5125767






 Score = 30.2 bits (15), Expect = 1.2
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 121     cagggcgcaggcgcg 135
               |||||||||||||||
Sbjct: 5146123 cagggcgcaggcgcg 5146137






 Score = 30.2 bits (15), Expect = 1.2
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                              
Query: 204     cccgccgggcacatc 218
               |||||||||||||||
Sbjct: 5862961 cccgccgggcacatc 5862947






 Score = 30.2 bits (15), Expect = 1.2
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                              
Query: 208     ccgggcacatcatct 222
               |||||||||||||||
Sbjct: 6254314 ccgggcacatcatct 6254328






 Score = 28.2 bits (14), Expect = 4.6
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                           
Query: 192   gcgcaccgcctacc 205
             ||||||||||||||
Sbjct: 16989 gcgcaccgcctacc 17002






 Score = 28.2 bits (14), Expect = 4.6
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                           
Query: 50    acacggccagcacg 63
             ||||||||||||||
Sbjct: 80573 acacggccagcacg 80560






 Score = 28.2 bits (14), Expect = 4.6
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                            
Query: 49     tacacggccagcac 62
              ||||||||||||||
Sbjct: 555548 tacacggccagcac 555561






 Score = 28.2 bits (14), Expect = 4.6
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                            
Query: 124    ggcgcaggcgcgag 137
              ||||||||||||||
Sbjct: 609193 ggcgcaggcgcgag 609180






 Score = 28.2 bits (14), Expect = 4.6
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                            
Query: 125    gcgcaggcgcgagg 138
              ||||||||||||||
Sbjct: 825328 gcgcaggcgcgagg 825315






 Score = 28.2 bits (14), Expect = 4.6
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                            
Query: 124    ggcgcaggcgcgag 137
              ||||||||||||||
Sbjct: 830874 ggcgcaggcgcgag 830861






 Score = 28.2 bits (14), Expect = 4.6
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                             
Query: 189     cttgcgcaccgcct 202
               ||||||||||||||
Sbjct: 1184912 cttgcgcaccgcct 1184899






 Score = 28.2 bits (14), Expect = 4.6
 Identities = 17/18 (94%)
 Strand = Plus / Minus

                                 
Query: 124     ggcgcaggcgcgaggcgt 141
               |||||||||||| |||||
Sbjct: 1257477 ggcgcaggcgcgcggcgt 1257460






 Score = 28.2 bits (14), Expect = 4.6
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                             
Query: 187     ttcttgcgcaccgc 200
               ||||||||||||||
Sbjct: 1454196 ttcttgcgcaccgc 1454183






 Score = 28.2 bits (14), Expect = 4.6
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                             
Query: 121     cagggcgcaggcgc 134
               ||||||||||||||
Sbjct: 1587077 cagggcgcaggcgc 1587090






 Score = 28.2 bits (14), Expect = 4.6
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                             
Query: 132     cgcgaggcgtgcgc 145
               ||||||||||||||
Sbjct: 1812961 cgcgaggcgtgcgc 1812948






 Score = 28.2 bits (14), Expect = 4.6
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                             
Query: 124     ggcgcaggcgcgag 137
               ||||||||||||||
Sbjct: 1989684 ggcgcaggcgcgag 1989697






 Score = 28.2 bits (14), Expect = 4.6
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                             
Query: 223     gcaggcctggccaa 236
               ||||||||||||||
Sbjct: 2486623 gcaggcctggccaa 2486610






 Score = 28.2 bits (14), Expect = 4.6
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                             
Query: 108     tttcaccggtcttc 121
               ||||||||||||||
Sbjct: 2759761 tttcaccggtcttc 2759774






 Score = 28.2 bits (14), Expect = 4.6
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                             
Query: 127     gcaggcgcgaggcg 140
               ||||||||||||||
Sbjct: 2846154 gcaggcgcgaggcg 2846167






 Score = 28.2 bits (14), Expect = 4.6
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                             
Query: 162     gcttcccgacgcag 175
               ||||||||||||||
Sbjct: 2936283 gcttcccgacgcag 2936270






 Score = 28.2 bits (14), Expect = 4.6
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                             
Query: 121     cagggcgcaggcgc 134
               ||||||||||||||
Sbjct: 3075220 cagggcgcaggcgc 3075207






 Score = 28.2 bits (14), Expect = 4.6
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                             
Query: 124     ggcgcaggcgcgag 137
               ||||||||||||||
Sbjct: 3289394 ggcgcaggcgcgag 3289381






 Score = 28.2 bits (14), Expect = 4.6
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                             
Query: 101     ccatcgttttcacc 114
               ||||||||||||||
Sbjct: 3290914 ccatcgttttcacc 3290901






 Score = 28.2 bits (14), Expect = 4.6
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                             
Query: 127     gcaggcgcgaggcg 140
               ||||||||||||||
Sbjct: 3428680 gcaggcgcgaggcg 3428693






 Score = 28.2 bits (14), Expect = 4.6
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                             
Query: 63      gaagatgatcaggt 76
               ||||||||||||||
Sbjct: 3496492 gaagatgatcaggt 3496505






 Score = 28.2 bits (14), Expect = 4.6
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                             
Query: 68      tgatcaggttgtag 81
               ||||||||||||||
Sbjct: 3573925 tgatcaggttgtag 3573938






 Score = 28.2 bits (14), Expect = 4.6
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                             
Query: 53      cggccagcacgaag 66
               ||||||||||||||
Sbjct: 3669409 cggccagcacgaag 3669422






 Score = 28.2 bits (14), Expect = 4.6
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                             
Query: 197     ccgcctacccgccg 210
               ||||||||||||||
Sbjct: 3754587 ccgcctacccgccg 3754574






 Score = 28.2 bits (14), Expect = 4.6
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                             
Query: 189     cttgcgcaccgcct 202
               ||||||||||||||
Sbjct: 3859591 cttgcgcaccgcct 3859604






 Score = 28.2 bits (14), Expect = 4.6
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                             
Query: 62      cgaagatgatcagg 75
               ||||||||||||||
Sbjct: 4207409 cgaagatgatcagg 4207422






 Score = 28.2 bits (14), Expect = 4.6
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                             
Query: 182     agccgttcttgcgc 195
               ||||||||||||||
Sbjct: 4364211 agccgttcttgcgc 4364224






 Score = 28.2 bits (14), Expect = 4.6
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                             
Query: 115     ggtcttcagggcgc 128
               ||||||||||||||
Sbjct: 4548694 ggtcttcagggcgc 4548681






 Score = 28.2 bits (14), Expect = 4.6
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                             
Query: 223     gcaggcctggccaa 236
               ||||||||||||||
Sbjct: 4878623 gcaggcctggccaa 4878636






 Score = 28.2 bits (14), Expect = 4.6
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                             
Query: 205     ccgccgggcacatc 218
               ||||||||||||||
Sbjct: 4928755 ccgccgggcacatc 4928742






 Score = 28.2 bits (14), Expect = 4.6
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                             
Query: 53      cggccagcacgaag 66
               ||||||||||||||
Sbjct: 5239034 cggccagcacgaag 5239047






 Score = 28.2 bits (14), Expect = 4.6
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                             
Query: 53      cggccagcacgaag 66
               ||||||||||||||
Sbjct: 5250021 cggccagcacgaag 5250034






 Score = 28.2 bits (14), Expect = 4.6
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                             
Query: 124     ggcgcaggcgcgag 137
               ||||||||||||||
Sbjct: 5388647 ggcgcaggcgcgag 5388660






 Score = 28.2 bits (14), Expect = 4.6
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                             
Query: 200     cctacccgccgggc 213
               ||||||||||||||
Sbjct: 5507148 cctacccgccgggc 5507135






 Score = 28.2 bits (14), Expect = 4.6
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                             
Query: 187     ttcttgcgcaccgc 200
               ||||||||||||||
Sbjct: 5654084 ttcttgcgcaccgc 5654097






 Score = 28.2 bits (14), Expect = 4.6
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                             
Query: 188     tcttgcgcaccgcc 201
               ||||||||||||||
Sbjct: 5693715 tcttgcgcaccgcc 5693702






 Score = 28.2 bits (14), Expect = 4.6
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                             
Query: 170     acgcagcggctcag 183
               ||||||||||||||
Sbjct: 5873258 acgcagcggctcag 5873245






 Score = 28.2 bits (14), Expect = 4.6
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                             
Query: 186     gttcttgcgcaccg 199
               ||||||||||||||
Sbjct: 6186403 gttcttgcgcaccg 6186416






 Score = 28.2 bits (14), Expect = 4.6
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                             
Query: 56      ccagcacgaagatg 69
               ||||||||||||||
Sbjct: 6439735 ccagcacgaagatg 6439748






  Database: pa14
    Posted date:  Jan 15, 2004  3:01 PM
  Number of letters in database: 6,534,396
  Number of sequences in database:  1
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1879
Number of Sequences: 1
Number of extensions: 1879
Number of successful extensions: 55
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 55
length of query: 238
length of database: 6,534,396
effective HSP length: 15
effective length of query: 223
effective length of database: 6,534,381
effective search space: 1457166963
effective search space used: 1457166963
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 14 (28.2 bits)